I had a friend who owned a rearend shop (since passed away)
He used to say, and tell customers, that once a set of gears whine, they will ALWAYS whine, no matter how good the next setup, or technician.
That said, I hear a lot of complaints about noise from the current avalable gearsets, almost all of which are made "offshore" on cheaper equipment.
Hate to say it, but there's a good chance a new gearset, even set up perfect, won't be any better than what you have now.
If you can live with it, I'd leave it.
And put on louder mufflers, lol.