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You both have good points. You don't want the alternator output to go OPEN / unconnected. On external regulated alternator the alter may output high and unregulated voltages that might damage the alternator diodes (depending on what voltage they are rated for.) The external regulator will also be applying maximum current that it can to the alternator field windings (this will happen when the regulator senses the ignition voltage is below the regulators set point. Either alternator open or short in alternator out or ignition sense. I am not sure how an internally regulated alternator would react to no battery load, but I would think the alternator output is going to be very noisy?
The fuses are not sized by the alternator current output, They are sized by the wiring gauge in the harness they are protecting.
With a short-circuit at the alternator, you are not protecting the alternator, but the wiring harness going to the alternator (sourced from battery.)
Alternator output should be routed to the battery, and then vehicle power taken from battery. A common point with low resistance. large wiring or bus bar is nearly the same as directly from the battery, but if you loose the battery connection, and the only the alternator is supplying power than the output is going to be noisy, maybe with high voltage spikes depending on the capacitor in the alternator (and any other capacitance in the connected circuit.)
As mentioned above, it would be rare that a 100+ AMP alternator will be operating at maximum output, unless you are operating a bunch of electrical accessories.
Usually 4AWG is good from alternator to battery is the cars actual constant electrical loads are < 100 amps, and a 100 Amp mega-fuse (slow-blow) will protect the 4 AWG wire.
It is fine to go with larger size wire because it will have less restive losses, but it will weigh more, cost more, and routing is more difficult.
What I am trying to say, For example, you have a 100 Amp alternator, and your electrical loads are normally < 60 Amps.
You could wire the alternator with 8AWG wire and a 60 Amp slow-blow fuse (or fusible link) at the alternator output, but not a 100 Amp fuse.
Although the alternator could supply the 100 amps if there is a short between the alternator and battery. The wire is not rated for 100 amps of current and will melt after a short time.
Also as pointed out above, if there is a short, normally the battery is the source supplying the power. A battery fuse (if even using one) is going to be very large so the starter circuit does not blow the fuse. Single ought (1/0) welding cable normally used in battery relocation is good for 300 Amps for a few minutes.
A 300 Amp Mega-Fuse can withstand short high currents around 1,000 Amps for about 1 second (non-derated.) At normal temperatures and say 400 AMPS through the 300 AMP mega-fuse, it would take a few minutes for the fuse to blow. It looks like a 250 Amp fuse may be a better selection?
I'm no expert, but I would need to do more research on wire size to fuse rating, and length/temperature derating (although most wires are fairly short compared to most derating graphs.)
https://www.littelfuse.com/~/media/...bolt-down-fuses/littelfuse_mega_datasheet.pdf
I'm aware of the typical time-current melting curve for fuses. Because its based on a log-log graph, time is relative to the current interrupted, the higher the current, the shorter the time to interrupt. In addition, the ambient temperature along with the wire's insulation type affect the ultimate amperage the conductor can withstand. For example, look at the NEC for a given wire size and insulation types, THHN, THWN, MTW, or silicon in open air or conduit and if in conduit, the fill factor de-rating variable. True, automotive systems typically do not subscribe to NEC standards, but ambient temperature should influence conductor sizing.
My innitial point was Nacho-74RT, speaks in generalities without any actual figures to substantiate and without any fundamental knowledge of electrical systems operation. The unfortunate result is many of the forum's subscribers take his comments as "gospel".
And to a later contributor's comments re starter motor current draw, the amperage draw during cranking is influenced by: engine compression ratios, oil viscosity, temperature (as battery temperature decreases, the chemicial efficiency decreases and output decreases) of both the engine and ambient temp, 300 amps - 400 amps current draw is not unreasonable. The number mentioned is a typical or average value as noted in the FSM.
As a side bar, I have a B.S. drgree in Electrical engineering and a Professional Electrical Engineer credential, which, I believe, qualifies my comments. I'm sure others will disagree.....
BOB RENTON