I realize you spent a pile of money getting the engine back together, but……to this point at least……… your experience highlights the fact that no matter how much “better” a particular combo looks on paper, unless you’re duplicating a proven package(to the letter), then you don’t really know what you have until you test it.
Had it been put on the dyno(the same one as before), if the new combo made less power, then a slower on track performance would have been expected.
As it stands now, you’re back to a point of trying to determine where the missing ET went.
Is the engine making less power than before?
Or is it something else entirely?
I’d def start out by cleaning out the carbs and getting fresh fuel.
Go thru the valve lash, double check timing, make sure you’re getting full throttle, etc.
FWIW, I’ve only tested one engine with the Indy box ram on it.
That motor just kept responding to more and more jet.
It had Carter 750’s on it.
Does the car have a wide band gauge in it?
Does the converter seem to flash as high as it did with previous combo?