Might have missed something because I didn't read through the whole thread. You have AFR. Is it just the gauge, or are you logging it with RPM or time? Since you have the gauge, if you are not logging, I suggest figuring out how to log the AFR as the car bogs. If you are not logging it, you could be losing critical information. Seeing the curve can tell you a lot. You want to find out if it is dropping to too low AFR (flooding) or too high AFR (starving) and where that is happening (pump shot or transition to the boosters). This can tell you where to look to make changes.
The rest of this is just a list of things I try to keep in mind, but I think you already know them. It is possible to solve the problem one way and end up with something that really doesn't work. For instance, lean bog might be fixed by increasing the size of the main jets at the expense of the high RPM fuel curve. Logging the full curve lets you check everything. You also want to make sure you are not identifying something that really doesn't matter for any driving you would normally do. Wiring the secondaries shut will give some information, but you may find you have to start over once you allow them to open. Advancing initial timing with some cams can make a difference, but you will need to recurve the distributor so total advance doesn't make it ping. Ignition can also make problems worse but I do not get the impression that is what you have.