Don't mean to piss anyone off and this is just my opinion here, but I believe it's a gross mis-statement to say the bolts do not affect the bore. Having the right tools to measure and having the machine shop experience tells me that is incorrect. The only times the bores were not affected by a change in rod bolts, or main bores by a change to studs, was when exactly the same type of fastener replaced what came out.
Performance bolts are different material and manufactured differently in some cases, and when torqued properly and cycled WILL change the rod bore shape. Always. I've seen the rods bent because the bolts were hammered in without supporting the rod, and I've seen distorting by over-torqueing with a better fastener. This was a pet peeve of mine with 440Source connecting rods because they used ARP rod bolts and assembled the rods and machined them using engine oil - not the ARP lube. So when they were cleaned, lubed with the ARP lube, cycled, and measured - they were no longer round. Now they don't use ARP - but if you want they'll upgrade the bolts - without cycling or torqueing properly. So same issue...lol. Hence my (and most shops') recommendations for cycling and resizing.
It's not a huge income driver, nor are the other machining operations mentioned.
Factory machining quality is very easily improved on with an associated improvement in performance all around in power, lifespan, and economy by having all the modern machining done. Without question the investment in quality machining yields direct results from the moment the engine turns over the first time. If you wonder why two supposedly identical rebuilt engines from different shops have different qualities - that would be a big reason why. Ask your self why a shop owner would spend upwards of $100K to buy such equipment if there was no enhancement to the quality of the shop's product. The goal in performance building is to exceed factory quality - not duplicate it.
Read this:
http://arp-bolts.com/p/technical.php
The method of torqueing by measuring rotational torque to preload the bolts is not the most accurate way to measure the bolt's preload. Measuring the bolt's stretch is. So the idea that nuts are the "wear item" and cause for a torque value not to be met to can't hold water. Ever wonder why performance bolts of any make have dimples in the ends? It's for the stretch gage. Threads will wear in and lubricant will work it's way into the surfaces, causing the amount of turning or distance required to properly preload the bolt to increase. That's why new rod boles should be cycled once they are installed, PRIOR to measuring and resizing. Regardless of the measuring method a bolt's preload can be repeated unless the bolt itself was compromised (meaning overtorqued). Rod bolts do have a finite service life and that can be reduced by torqueing improperly. That means going too far and over stretching them. It's the body of the fastener that stretches. Not the nut. I've done it myself using the wrong torque spec or the wrong lube with the right spec. With ARP, if you use the moly lube and apply it properly the ARP spec is correct. If you use 30wt oil it is a different figure (higher) because the moly changes the coefficient of friction more than 30wt oil. If you use ARP lube on a factory rod bolt, using factory torque specs, chances are good it will be over-torqued and streched (mine were...lol). Bolt stretch gages are fairly inexpensive if someone wants to really do it like the bolt designers do.